| Α/Α | Επιστημονικό Όνομα | Κωδικός | Έντυπο αναφοράς | Χάρτης | 
| Θαλάσσια θηλαστικά (MMED) | 
| 1 | Balaenoptera acutorostrata (occasional) | 2618 |  | - | 
| 2 | Balaenoptera physalus | 2621 |  |  | 
| 3 | Delphinus delphis | 1350 |  |  | 
| 4 | Grampus griseus | 2030 |  |  | 
| 5 | Megaptera novaeangliae (occasional) | 1345 |  | - | 
| 6 | Monachus monachus | 1366 |  | - | 
| 7 | Phocoena phocoena | 1351 |  |  | 
| 8 | Physeter catodon | 5031 |  |  | 
| 9 | Pseudorca crassidens (occasional) | 2028 |  | - | 
| 10 | Tursiops truncatus | 1349 |  |  | 
| 11 | Ziphius cavirostris | 2035 |  |  | 
| 12 | Steno bredanensis (occasional) | 2033 |  | - | 
| 13 | Stenella caeruleoalba | 2034 |  |  | 
| Χερσαία θηλαστικά (MED) | 
| 14 | Barbastella barbastellus | 1308 |  |  | 
| 15 | Canis aureus | 1353 |  |  | 
| 16 | Canis lupus 
 | 1352 |  |  | 
| 17 | Capra aegagrus | 1372 |  |  | 
| 18 | Spermophilus citellus | 1335 |  | - | 
| 19 | Dryomys nitedula | 1342 |  |  | 
| 20 | Eptesicus serotinus | 1327 |  |  | 
| 21 | Eptesicus bottae | 2651 |  |  | 
| 22 | Felis silvestris | 1363 |  |  | 
| 23 | Lutra lutra | 1355 |  |  | 
| 24 | Lynx lynx | 1361 |  |  | 
| 25 | Martes martes | 1357 |  |  | 
| 26 | Miniopterus schreibersii | 1310 |  | - | 
| 27 | Muscardinus avellanarius | 1341 |  |  | 
| 28 | Mustela putorius | 1358 |  |  | 
| 29 | Myomimus roachi | 2617 |  |  | 
| 30 | Myotis alcathoe | 5003 |  |  | 
| 31 | Myotis aurascens | 5004 |  |  | 
| 32 | Myotis bechsteinii | 1323 |  |  | 
| 33 | Myotis blythii | 1307 |  | - | 
| 34 | Myotis brandtii | 1320 |  |  | 
| 35 | Myotis capacinii | 1316 |  | - | 
| 36 | Myotis daubentonii | 1314 |  |  | 
| 37 | Myotis emarginatus | 1321 |  | - | 
| 38 | Myotis myotis | 1324 |  | - | 
| 39 | Myotis mystacinus (JOINT REPORT WITH 5004-Myotis aurascens) | 1330 |  |  | 
| 40 | Myotis nattereri | 1322 |  | - | 
| 41 | Nyctalus lasiopterus | 1328 |  |  | 
| 42 | Nyctalus leisleri | 1331 |  |  | 
| 43 | Nyctalus noctula | 1312 |  |  | 
| 44 | Pipistrellus hanaki | 5253 |  |  | 
| 45 | Pipistrellus kuhlii | 2016 |  |  | 
| 46 | Pipistrellus nathusii | 1317 |  |  | 
| 47 | Pipistrellus pipistrellus | 1309 |  |  | 
| 48 | Pipistrellus pygmaeus | 5009 |  |  | 
| 49 | Hypsugo savii | 5365 |  |  | 
| 50 | Plecotus auritus | 1326 |  |  | 
| 51 | Plecotus austriacus | 1329 |  |  | 
| 52 | Plecotus kolombatovici | 5011 |  |  | 
| 53 | Plecotus macrobullaris | 5012 |  |  | 
| 54 | Rhinolophus blasii | 1306 |  | - | 
| 55 | Rhinolophus euryale | 1305 |  | - | 
| 56 | Rhinolophus ferrumequinum | 1304 |  | - | 
| 57 | Rhinolophus hipposideros | 1303 |  | - | 
| 58 | Rhinolophus mehelyi | 1302 |  | - | 
| 59 | Rupicapra rupicapra balcanica | 1371 |  |  | 
| 60 | Sciurus anomalus | 1336 |  |  | 
| 61 | Tadarida teniotis | 1333 |  |  | 
| 62 | Ursus arctos | 1354 |  |  | 
| 63 | Vespertilio murinus | 1332 |  |  | 
| 64 | Vormela peregusna | 2635 |  |  |